I have a 95 dark green Land Cruiser in Florida. It has been garaged most of the time, but has still spent plenty of time in hot sun. I have never waxed it, but I do occationally use a polymer finish called Dry Wash on it. It looks like new - including the roof. I don't even wash the roof regularly, let alone climb up there with the polymer towel.
It is my understanding that clear coat finishes don't oxidize like older paints did, hence the practice of polishing off the surface oxidation and sealing it with wax to delay repeat oxidation is not applicable.
I may be wrong on this, but it is my understanding that most paint problems on newer cars is due to acids, etc. that fall on them from the surroundings or from errors in manufacturing.
I agree that Lexus uses great paint (the finish on my 94 SC400 is also perfect), but in all manufacturing malfunctions in equipment and quality problems with materials occationally occur. I'm betting on a manufacturing defect on this one.