Just had a simular problem on my 04 rx350. The windows could not be operated from the drivers console after battery replacement. I dont know how much of this was needed, but here is what I did to restore them
1. All windows are up, and car is running
2. press down driver's control switch that is supposed to control passenger side window, held for 10 seconds
3. lowered passenger side window using passenger side switch
4. pulled up on driver's control switch that is supposed to control passenger side window, held for 10 seconds
5. Raised passenger side window using passenger side switch
After this worked, I repeated 2-5 with all the other windows, turned off car, turned back on and retested, they all work. I dont know how much of this was wasted effort, but some part of it worked, because now all my windows work again.
I do wish that these car companies would pay a little more attention to little snafu's like this. It gives an impression that the product was not rigorously tested. However, I still like the car..overall.
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