Hello -
I am definitely not a mechanic or a Lexus authority, but I may have a solution for you. I had somewhat similar thing happen with my 1995 LS400.
I wont bore you with the details on what happened, but tell you what I did that worked for me. Very simply, I loosened and removed the contacts from the battery.....waited a matter of seconds and re-connected them. Problem solved.
I dont know if doing this triggered or reset something in the security system, but again, it worked and no more alarm issues. Hope this helps. Good luck.
nll714:
Thanks for your suggestion. I will give it a try tomorrow.