David, good post! I was wondering if you could post the PDFs and outline your procedure in this thread?
My story:
I just bought a 2001 RX300 w/155K for my daughter (Looking for safety and AWD here in Minnesota). Didn't know about the transmission issues and after we bought it. We noticed what seemed like a downshift or wrong gear issue during certain times. When traveling about 40-45MPH and taking your foot off the gas, seemed like the car was slowing quicker than one would expect (like it was put into a lower gear, but not quite at the extreme of actually changing to L2 or L1, maybe never came out of it's current gear at 40-45?)
I then began to research on-line what it might be and found the many issues with the RX300 transmissions. I went ahead and preformed the fluid drain/fill and filter change as outlined in another post (removed about 8 old quarts and replaced with T-IV at $6.20 a quart and after-market filter). After that, seemed like the transmission was running a lot better. Fluid is now clear and the correct color, but might have a light burned smell beginning...? As we've driven about 200 miles now, it seems like this might be happening again. The color of the fluid is still clear and red, but I'm not 100% sure about the smell and it's making me nervous.
Based on other post and your comments above, I'm thinking there's not enough ATF flowing as you mention. I'm hoping if I can get to early enough, I might be able to save this thing! (or at least prolong failure.) Would the after-market filter have anything to do with reduced flow? When I researched the replacement, I read that the original from Lexus was only a screen and not a paper filter. When I took my pan off, it had a paper filter an not the OEM screen, so at least I know it was changed but not sure if the screen is required for better flow?
Any thoughts or feedback would be great!