Ported boxes deliver slow woolly peaky Bass, often louder than other designs but only at set frequencies. A REAL free air sub in a proper baffle (a la IB8 in the LS rear deck) will sound very musical, go pretty deep and smooth. What I noticed was that bass wasnt just a tone, but i could hear the difference between synthisized 40hz and bass guitar 40hz, hearing the strings in the bass sound
I have 5 years experience with installing car audio, I specialised in large saloons. I cant recommend enough that you try your hardest to make the rear deck IB speaker work as a solution for you. Lexus spent a LOT of time and money sound deadening that boot/rear seat area to prevent noise and road drone from entering the cab. It will block the bass in a standard sub box just the same.
There is only 1 other real option for serious bass in a car like this (other than a lot of large sub's running really high power to get bass through the cars interior). A design I came up with using an enclosure type called 5th order bandpass
These are different because the bass is delivered out of the port alone. The cone is not visable on the outside of the box. The picture there shows the port running inside the box, I realised i could move it to be half inside the box, half protruding from it, its the length of the tube that matters. The portion that sticks outside of the box i took up through the rear deck and sealed to the shelf.
This way 100% of the bass energy is delivered into the listening area, not trying to fight through a petrol tank, sound deadening, a rear leather seat and eventually into the car.
down side is each box needs custom designing to specifics of a sub driver. the results are worth it though.