Sandy,
I have an '04 LS430 with the same problem. I have been told that it is not possible to have the glass buffed so have come up with my own solution, but it is only practical for the larger nicks. I take a permanent black magic marker with a fine point and dot each nick. Let it dry well and then get a sharp razor blade to shave off any extra black next to the dots. When you are in the car looking through the windshield, the black dots are much harder to notice than the untreated ones, since they don't catch the light. You will have to repeat the exercise every few months.
Let me know how it works for you.
DandyDon
Thanks DandyDon, I'll try it today.